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Protocol

Preparation of deoxynucleotide triphosphate solutions

The concentration of the ultrapure dNTPs is only approximately 100 mM.

  1. Thaw the 100 mM dNTP completely
  2. Make a stock solution of the dNTP by mixing 50 mL dNTP and 950 mL H2O. The concentration will nominally be 5 mM.
  3. Add 10mL of this solution to 990 mL of either H2O or 0.1 M HCl is measuring cytosine and its derivatives.
  4. Measure the absorbance spectra from 230 to 340 nm and determine the absorbance at the appropriate wavelength according to Table 1.
  5. The concentration of the solution can be derived from Beers Law: A = ecl, in which A is the absorption, e the molar extinction coefficient, c the concentration, and l the pathlength.
Extinction coefficients for nucleotides
Compound e
(M-1 cm-1)
l
(nm)
pH
dATP 15,200 259 7.0
dCTP 13,100 280 2.0
dGTP 13,700 253 7.0
dTTP 9,600 267 7.0
dATPaS 259 7.0
dCTPaS 280 2.0
dGTPaS 13,600 253 7.0
dTTPaS 9,100 267 7.0
dITP 12,200 249 6.0
dUTP 10,200 262 7.0
c7-dATP 12,300 270 7.0
c7-dGTP 10,500 257 7.0
O6mG 11200 286 0.1 N HCl
7mG 10600 250 0.1 N HCl
6900 272
dR-3DG 13650 284 pH 1.0
6570 309 (sh)
10120 270 pH 7.0
8140 298
10210 272 pH 11.0
8140 295
8-HOdG 12,300 246
10,300 293
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