Protocol
Preparation of deoxynucleotide triphosphate solutions
The concentration of the ultrapure dNTPs is only approximately 100 mM.
- Thaw the 100 mM dNTP completely
- Make a stock solution of the dNTP by mixing 50 mL dNTP and 950
mL H2O. The concentration will nominally be 5 mM.
- Add 10mL of this solution to 990
mL of either H2O or 0.1 M HCl is measuring cytosine and its derivatives.
- Measure the absorbance spectra from 230 to 340 nm and determine the absorbance at the appropriate wavelength according to Table 1.
- The concentration of the solution can be derived from Beers Law: A =
ecl, in which A is the absorption,
e the molar extinction coefficient, c the concentration, and l the pathlength.
| Extinction coefficients for nucleotides |
| Compound |
e
(M-1 cm-1) |
l
(nm) |
pH |
| dATP |
15,200 |
259 |
7.0 |
| dCTP |
13,100 |
280 |
2.0 |
| dGTP |
13,700 |
253 |
7.0 |
| dTTP |
9,600 |
267 |
7.0 |
| dATPaS |
|
259 |
7.0 |
| dCTPaS |
|
280 |
2.0 |
| dGTPaS |
13,600 |
253 |
7.0 |
| dTTPaS |
9,100 |
267 |
7.0 |
| dITP |
12,200 |
249 |
6.0 |
| dUTP |
10,200 |
262 |
7.0 |
| c7-dATP |
12,300 |
270 |
7.0 |
| c7-dGTP |
10,500 |
257 |
7.0 |
| O6mG |
11200 |
286 |
0.1 N HCl |
| 7mG |
10600 |
250 |
0.1 N HCl |
|
6900 |
272 |
|
| dR-3DG |
13650 |
284 |
pH 1.0 |
|
6570 |
309 (sh) |
|
|
10120 |
270 |
pH 7.0 |
|
8140 |
298 |
|
|
10210 |
272 |
pH 11.0 |
|
8140 |
295 |
|
| 8-HOdG |
12,300 |
246 |
|
|
10,300 |
293 |
|
|